Basic Information
Locus ID:
gene:ENSEOMG00000040175
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 27 | 5809305 | 5828725 | - | gene:ENSEOMG00000040175 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 139,133.30 Da | 46.70 | 88.77 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 237 | 285 | 2.88703E-15 | - |
| Pfam | PF04551 | GcpE protein | 593 | 1235 | 1.1E-151 | IPR004588 |
| Pfam | PF12906 | RING-variant domain | 237 | 284 | 1.5E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 233 | 288 | 3.67E-12 | - |
| SUPERFAMILY | SSF56014 | Nitrite and sulphite reductase 4Fe-4S domain-like | 1145 | 1237 | 2.16E-14 | - |
| Gene3D | G3DSA:3.20.20.20 | - | 586 | 871 | 2.1E-116 | IPR011005 |
| Gene3D | G3DSA:3.30.413.10 | Sulfite Reductase Hemoprotein, domain 1 | 1143 | 1240 | 6.5E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 221 | 292 | 1.9E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 236 | 285 | 1.3E-18 | IPR011016 |
| TIGRFAM | TIGR00612 | ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | 590 | 876 | 2.5E-104 | IPR004588 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 229 | 291 | 18.647602 | IPR011016 |
| Hamap | MF_00159 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. | 588 | 1238 | 40.211483 | IPR004588 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 227 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Reaction:
R08689 (2-C-Methyl-D-erythritol 2,4-cyclodiphosphate + 2 Reduced ferredoxin <=> 1-Hydroxy-2-methyl-2-butenyl 4-diphosphate + H2O + 2 Oxidized ferredoxin)
R10859 (1-Hydroxy-2-methyl-2-butenyl 4-diphosphate + H2O + Oxidized flavodoxin <=> 2-C-Methyl-D-erythritol 2,4-cyclodiphosphate + Reduced flavodoxin)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60600.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase. Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP<sup>+</sup> reductase. | 0 |
| RefSeq | XP_021728338.1 | LOW QUALITY PROTEIN: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like [Chenopodium quinoa] | 0 |
| F4K0E8 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISPG PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3HB48 | Threonylcarbamoyl-AMP synthase OS=Corchorus capsularis OX=210143 GN=CCACVL1_20494 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology