Basic Information
Locus ID:
gene:ENSEOMG00000040014
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3 | 3012739 | 3016212 | + | gene:ENSEOMG00000040014 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 51,825.85 Da | 40.51 | 80.77 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 170 | 206 | 0.0037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 328 | 362 | 0.015 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 141 | 160 | 1.1E-6 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 290 | 323 | 0.006 | IPR001680 |
| Pfam | PF14608 | RNA-binding, Nab2-type zinc finger | 34 | 52 | 2.5E-4 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 168 | 458 | 2.32E-46 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 138 | 161 | 1.83E-6 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 150 | 305 | 1.4E-16 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 5 | 66 | 1.1E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 306 | 465 | 1.3E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 367 | 410 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 242 | 279 | 7.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 167 | 206 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 286 | 323 | 0.0014 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 136 | 162 | 9.0E-5 | IPR000571 |
| SMART | SM00320 | WD40_4 | 413 | 450 | 48.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 30 | 53 | 0.0014 | IPR000571 |
| SMART | SM00320 | WD40_4 | 326 | 363 | 0.0051 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 293 | 326 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 174 | 206 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 174 | 206 | 9.572873 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 293 | 332 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 28 | 54 | 13.365949 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 136 | 163 | 13.919906 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 310 | 324 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 310 | 324 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 350 | 364 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 193 | 207 | 1.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021731198.1 | zinc finger CCCH domain-containing protein 48-like [Chenopodium quinoa] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MB75 | Zinc finger CCCH domain-containing protein 48-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology