Basic Information
Locus ID:
gene:ENSEOMG00000039962
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
zinc finger (Ran-binding) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4 | 8213976 | 8220780 | - | gene:ENSEOMG00000039962 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 94,315.56 Da | 59.05 | 46.12 | -1.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 379 | 406 | 2.5E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 345 | 373 | 1.8E-10 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 338 | 374 | 2.47E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 337 | 375 | 9.7E-16 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 376 | 407 | 2.2E-8 | - |
| SMART | SM00547 | zf_4 | 347 | 371 | 6.6E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 380 | 404 | 2.2E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 378 | 407 | 9.450083 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 345 | 374 | 10.251829 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 349 | 368 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 382 | 401 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 592 | 632 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 639 | 664 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 796 | 822 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 778 | 795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 583 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 822 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 754 | 773 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 743 | - | - |
| Coils | Coil | Coil | 66 | 93 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_021838406.1 | uncharacterized protein LOC110778153 [Spinacia oleracea] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KP54 | Zinc finger protein VAR3, chloroplastic OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology