Basic Information
Locus ID:
gene:ENSEOMG00000039648
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3 | 43866514 | 43871149 | - | gene:ENSEOMG00000039648 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 48,707.42 Da | 57.12 | 84.33 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 233 | 281 | 9.25301E-16 | - |
| Pfam | PF12906 | RING-variant domain | 233 | 280 | 2.0E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 229 | 284 | 8.48E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 223 | 288 | 4.5E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 232 | 281 | 2.9E-20 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 225 | 287 | 20.233047 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 446 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09760.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021745417.1 | E3 ubiquitin-protein ligase MARCH7-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803NAV5 | RING-CH-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology