Basic Information
Locus ID:
gene:ENSEOMG00000039266
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 26 | 5585419 | 5594472 | + | gene:ENSEOMG00000039266 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 46,239.37 Da | 47.93 | 64.57 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 262 | 337 | 1.49516E-32 | - |
| CDD | cd12619 | RRM2_PUB1 | 142 | 216 | 2.59377E-51 | - |
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 2.12716E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 264 | 317 | 1.3E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 9.7E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 143 | 213 | 2.3E-18 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 254 | 343 | 1.76E-19 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 51 | 223 | 3.26E-45 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 134 | 6.5E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 135 | 234 | 6.8E-27 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 239 | 342 | 6.3E-21 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 263 | 333 | 1.2E-14 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 142 | 215 | 4.9E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 3.6E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 262 | 337 | 14.419374 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 14.760482 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 141 | 219 | 17.182348 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 260 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021720427.1 | oligouridylate-binding protein 1B-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KQY9 | Oligouridylate-binding protein 1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology