Basic Information
Locus ID:
gene:ENSEOMG00000038737
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 27 | 314313 | 326460 | + | gene:ENSEOMG00000038737 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 90,552.11 Da | 46.84 | 86.28 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 36 | 402 | 9.75773E-80 | - |
| CDD | cd18793 | SF2_C_SNF | 658 | 762 | 3.37377E-52 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 656 | 753 | 1.4E-14 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 56 | 479 | 2.2E-65 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 518 | 554 | 6.1E-8 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 13 | 402 | 9.32E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 410 | 809 | 5.5E-55 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 514 | 560 | 3.14E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 508 | 568 | 1.3E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 168 | 254 | 3.5E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 10 | 98 | 2.1E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 264 | 415 | 1.6E-31 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 417 | 812 | 3.4E-61 | IPR027417 |
| SMART | SM00490 | helicmild6 | 670 | 753 | 2.7E-15 | IPR001650 |
| SMART | SM00487 | ultradead3 | 32 | 369 | 6.8E-28 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 184 | 364 | 11.798 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 640 | 806 | 13.914839 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 518 | 557 | 11.235273 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 533 | 542 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 176 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021735489.1 | helicase-like transcription factor CHR28 isoform X1 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LS17 | Helicase-like transcription factor CHR28 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology