Basic Information
Locus ID:
gene:ENSEOMG00000038653
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Chromatin structure-remodeling complex subunit RSC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 27 | 31177431 | 31183813 | + | gene:ENSEOMG00000038653 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 24,812.61 Da | 51.17 | 49.68 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 24 | 136 | 3.7E-21 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 141 | 189 | 8.2E-10 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 132 | 193 | 1.26E-18 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 203 | 1.9E-19 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 5 | 135 | 3.7E-30 | IPR043151 |
| SMART | SM00439 | BAH_4 | 21 | 137 | 1.1E-42 | IPR001025 |
| SMART | SM00249 | PHD_3 | 141 | 188 | 8.1E-8 | IPR001965 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 137 | 23.539238 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 139 | 190 | 9.196301 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 142 | 187 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 216 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_021731534.1 | chromatin remodeling protein SHL-like [Chenopodium quinoa] | 0 |
| Q9FEN9 | Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LDM2 | Chromatin remodeling protein SHL-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology