Basic Information
Locus ID:
gene:ENSEOMG00000038441
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 27 | 29037352 | 29045743 | - | gene:ENSEOMG00000038441 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.90 | 119,814.80 Da | 44.54 | 81.17 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 569 | 701 | 1.73216E-71 | - |
| CDD | cd17920 | DEXHc_RecQ | 366 | 568 | 1.39989E-105 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 587 | 691 | 1.9E-17 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 703 | 784 | 2.3E-16 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 380 | 548 | 2.2E-19 | IPR011545 |
| Pfam | PF09382 | RQC domain | 792 | 873 | 1.5E-17 | IPR018982 |
| Pfam | PF00570 | HRDC domain | 888 | 955 | 1.2E-14 | IPR002121 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 353 | 710 | 7.1E-43 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 879 | 961 | 5.23E-14 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 567 | 834 | 5.91E-58 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 884 | 966 | 3.8E-20 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 792 | 883 | 1.0E-14 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 341 | 568 | 1.0E-92 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 569 | 788 | 4.5E-66 | IPR027417 |
| SMART | SM00487 | ultradead3 | 374 | 577 | 8.8E-31 | IPR014001 |
| SMART | SM00956 | RQC_2 | 794 | 901 | 3.7E-14 | IPR018982 |
| SMART | SM00341 | hrdc7 | 883 | 965 | 3.3E-6 | IPR002121 |
| SMART | SM00490 | helicmild6 | 611 | 692 | 1.3E-27 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 370 | 845 | 3.6E-163 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 583 | 747 | 19.118313 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 386 | 561 | 21.386286 | IPR014001 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 601 | 643 | 9.728662 | IPR001763 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 883 | 965 | 17.511457 | IPR002121 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 500 | 509 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 974 | 989 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 962 | 1013 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 998 | 1013 | - | - |
| Coils | Coil | Coil | 239 | 259 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_021736695.1 | ATP-dependent DNA helicase Q-like 4A [Chenopodium quinoa] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LN05 | DNA helicase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology