Basic Information
Locus ID:
gene:ENSEOMG00000037452
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 26 | 9791324 | 9801992 | - | gene:ENSEOMG00000037452 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 79,184.70 Da | 48.44 | 70.53 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 455 | 729 | 5.51498E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 456 | 483 | 0.0017 | IPR001680 |
| Pfam | PF08513 | LisH | 3 | 26 | 1.3E-5 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 493 | 525 | 3.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 612 | 647 | 0.0024 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 456 | 729 | 1.04E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 417 | 579 | 2.1E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 580 | 729 | 7.2E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 609 | 647 | 1.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 445 | 483 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 528 | 567 | 50.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 691 | 729 | 0.015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 486 | 525 | 5.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 650 | 689 | 0.98 | IPR001680 |
| SMART | SM00320 | WD40_4 | 570 | 606 | 10.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 616 | 656 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 493 | 525 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 458 | 492 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 698 | 729 | 9.539323 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 493 | 525 | 11.128319 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 1 | 31 | 8.882669 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 698 | 729 | 9.388329 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 470 | 484 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 356 | - | - |
| Coils | Coil | Coil | 70 | 90 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_021763452.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Chenopodium quinoa] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LAL8 | LisH domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology