Basic Information
Locus ID:
gene:ENSEOMG00000037436
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 26 | 2169327 | 2172942 | - | gene:ENSEOMG00000037436 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 64,697.00 Da | 33.41 | 94.64 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 201 | 243 | 1.88354E-28 | - |
| Pfam | PF04564 | U-box domain | 197 | 267 | 4.9E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 366 | 404 | 3.2E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 407 | 445 | 2.5E-7 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 489 | 528 | 3.1E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 324 | 363 | 2.1E-10 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 295 | 568 | 8.64E-51 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 192 | 273 | 1.36E-31 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 197 | 270 | 7.3E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 277 | 432 | 3.6E-36 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 435 | 575 | 2.7E-22 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 200 | 263 | 7.8E-33 | IPR003613 |
| SMART | SM00185 | arm_5 | 324 | 364 | 6.3E-7 | IPR000225 |
| SMART | SM00185 | arm_5 | 488 | 528 | 16.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 447 | 487 | 10.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 406 | 446 | 0.74 | IPR000225 |
| SMART | SM00185 | arm_5 | 365 | 405 | 0.058 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 458 | 500 | 8.9424 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 196 | 270 | 45.893257 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 376 | 418 | 8.5924 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 335 | 377 | 12.9674 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 193 | - | - |
| Coils | Coil | Coil | 554 | 585 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_021716169.1 | U-box domain-containing protein 13-like [Chenopodium quinoa] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LCK3 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology