Basic Information
Locus ID:
gene:ENSEOMG00000036581
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 25 | 9195792 | 9204126 | - | gene:ENSEOMG00000036581 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 68,991.17 Da | 51.46 | 85.39 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 285 | 589 | 2.49217E-133 | - |
| Pfam | PF01753 | MYND finger | 50 | 87 | 1.0E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 286 | 588 | 9.1E-47 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 46 | 89 | 4.71E-12 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 282 | 594 | 7.85E-85 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 39 | 93 | 8.9E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 279 | 593 | 2.7E-91 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 286 | 591 | 50.274406 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 50 | 87 | 11.44711 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 50 | 87 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 287 | 302 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 181 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021743660.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Chenopodium quinoa] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LUZ4 | Ubiquitin carboxyl-terminal hydrolase 16-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology