halophFGD

Basic Information

Locus ID: gene:ENSEOMG00000036403

Species & Taxonomic ID: Chenopodium album & 3559

Genome Assembly: GCA_948465745.1

Description: Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
26	3847852	3853419	+	gene:ENSEOMG00000036403

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.06	132,246.45 Da	41.92	98.19	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00637	Region in Clathrin and VPS	893	1032	8.5E-31	IPR000547
Pfam	PF00637	Region in Clathrin and VPS	154	293	1.3E-21	IPR000547
Pfam	PF00637	Region in Clathrin and VPS	303	436	8.7E-28	IPR000547
Pfam	PF00637	Region in Clathrin and VPS	446	584	3.2E-31	IPR000547
Pfam	PF00637	Region in Clathrin and VPS	597	734	3.0E-27	IPR000547
Pfam	PF00637	Region in Clathrin and VPS	743	884	1.4E-27	IPR000547
Pfam	PF00637	Region in Clathrin and VPS	10	143	5.6E-23	IPR000547
SUPERFAMILY	SSF48371	ARM repeat	504	648	2.62E-27	IPR016024
SUPERFAMILY	SSF48371	ARM repeat	354	519	1.81E-36	IPR016024
SUPERFAMILY	SSF48371	ARM repeat	649	984	1.32E-107	IPR016024
SUPERFAMILY	SSF48371	ARM repeat	12	246	1.44E-62	IPR016024
Gene3D	G3DSA:1.25.40.730	-	995	1091	9.1E-41	-
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	510	649	4.3E-27	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	650	989	1.3E-164	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	355	509	9.9E-7	IPR011990
SMART	SM00299	CLH_2	595	736	2.2E-36	IPR000547
SMART	SM00299	CLH_2	890	1049	5.8E-44	IPR000547
SMART	SM00299	CLH_2	153	295	4.1E-39	IPR000547
SMART	SM00299	CLH_2	741	887	1.1E-43	IPR000547
SMART	SM00299	CLH_2	4	146	7.0E-34	IPR000547
SMART	SM00299	CLH_2	300	439	3.8E-41	IPR000547
SMART	SM00299	CLH_2	446	591	7.5E-44	IPR000547
PIRSF	PIRSF002290	CHC	1	1143	0.0	IPR016341
ProSiteProfiles	PS50236	Clathrin heavy-chain (CHCR) repeat profile.	300	439	36.229401	IPR000547
ProSiteProfiles	PS50236	Clathrin heavy-chain (CHCR) repeat profile.	890	1033	41.04081	IPR000547
ProSiteProfiles	PS50236	Clathrin heavy-chain (CHCR) repeat profile.	741	887	42.592613	IPR000547
ProSiteProfiles	PS50236	Clathrin heavy-chain (CHCR) repeat profile.	595	736	36.557823	IPR000547
ProSiteProfiles	PS50236	Clathrin heavy-chain (CHCR) repeat profile.	153	295	34.209587	IPR000547
ProSiteProfiles	PS50236	Clathrin heavy-chain (CHCR) repeat profile.	446	591	43.487572	IPR000547
ProSiteProfiles	PS50236	Clathrin heavy-chain (CHCR) repeat profile.	4	150	36.434662	IPR000547
Coils	Coil	Coil	1070	1105	-	-
Coils	Coil	Coil	930	950	-	-

Gene Ontology

Biological Process:

GO:0006886 (intracellular protein transport) GO:0016192 (vesicle-mediated transport)

Molecular Function:

GO:0005515 (protein binding) GO:0032051 (clathrin light chain binding)

Cellular Component:

GO:0071439 (clathrin complex)

KEGG Pathway

KO Term:

K04646 (clathrin heavy chain)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G11130.1	Clathrin, heavy chain.
RefSeq	XP_021715572.1	clathrin heavy chain 1-like [Chenopodium quinoa]
Swiss-Prot	Q0WNJ6	Clathrin heavy chain 1 OS=Arabidopsis thaliana OX=3702 GN=CHC1 PE=1 SV=1
TrEMBL	A0A0K9RWJ9	Clathrin heavy chain OS=Spinacia oleracea OX=3562 GN=SOVF_026880 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg10038, jg14260, jg34119
Aizoaceae	Mesembryanthemum crystallinum	2	gene_24312, gene_5770
Amaranthaceae	Atriplex hortensis	1	Ah027811
Amaranthaceae	Beta vulgaris	2	BVRB_2g023550, BVRB_7g171840
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg1532, Sbi_jg21460, Sbi_jg22357, Sbi_jg35014
Amaranthaceae	Salicornia europaea	2	Seu_jg16283, Seu_jg3217
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00016473
Amaranthaceae	Suaeda glauca	4	Sgl62831, Sgl67446, Sgl72654, Sgl76192
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000017167, gene:ENSEOMG00000036403 ... gene:ENSEOMG00000042282
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1BG0020030, CQ.Regalona.r1.2AG0021790 ... CQ.Regalona.r1.7AG0004730, CQ.Regalona.r1.9BG0001060
Anacardiaceae	Pistacia vera	3	pistato.v30061210, pistato.v30065190, pistato.v30177160
Apiaceae	Apium graveolens	3	Ag10G01296, Ag8G00007, Ag8G00430
Arecaceae	Cocos nucifera	2	COCNU_04G003360, COCNU_12G006920
Arecaceae	Phoenix dactylifera	2	gene-LOC103718112, gene-LOC103718217
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.508.V1.1, AsparagusV1_07.439.V1.1
Asteraceae	Flaveria trinervia	3	Ftri17G29926, Ftri18G15874, Ftri1G14408
Brassicaceae	Arabidopsis thaliana	2	AT3G08530.1, AT3G11130.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10005737m.g.v1.0, Thhalv10019884m.g.v1.0 ... Thhalv10019886m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g07010.v2.2, Sp3g09440.v2.2
Brassicaceae	Brassica nigra	5	BniB01g053920.2N, BniB01g055970.2N, BniB07g025160.2N ... BniB07g057170.2N, BniB07g058670.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0109, Ceq08G1851
Casuarinaceae	Casuarina glauca	2	Cgl02G0119, Cgl08G1908
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno05g15190, gene.Cymno15g06980, gene.Cymno18g00690
Dunaliellaceae	Dunaliella salina	1	Dusal.0114s00011.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g27690, gene.Thate01g32470
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8217
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1892, evm.TU.LG02.2229
Plantaginaceae	Plantago ovata	2	Pov_00011784, Pov_00040538
Plumbaginaceae	Limonium bicolor	2	Lb3G19231, Lb3G20233
Poaceae	Echinochloa crus-galli	4	AH04.22, AH05.100, BH04.29, CH04.29
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0378510, gene-QOZ80_5BG0425600 ... gene-QOZ80_9AG0671940, gene-QOZ80_9BG0695490
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.4HG0354730.1, HORVU.MOREX.r3.5HG0465820.1
Poaceae	Lolium multiflorum	5	gene-QYE76_003751, gene-QYE76_027283, gene-QYE76_036738 ... gene-QYE76_065222, gene-QYE76_065384
Poaceae	Oryza coarctata	3	Oco22G000070, Ocoptg000061lG000180, Ocoptg000463lG000010
Poaceae	Oryza sativa	2	LOC_Os11g01380.1, LOC_Os12g01390.1
Poaceae	Paspalum vaginatum	2	gene-BS78_05G003400, gene-BS78_08G001600
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0103585, Pt_Chr0103631, Pt_Chr0705210
Poaceae	Sporobolus alterniflorus	7	Chr04G020700, Chr07G022460, Chr16G007860, Chr17G007090 ... Chr19G011280, Chr27G004840, Chr31G000110
Poaceae	Thinopyrum elongatum	2	Tel4E01G211100, Tel5E01G265200
Poaceae	Triticum dicoccoides	5	gene_TRIDC3AG073860, gene_TRIDC4AG029250 ... gene_TRIDC4BG021160, gene_TRIDC5AG025590, gene_TRIDC5BG026730
Poaceae	Triticum aestivum	6	TraesCS4A02G182300.1, TraesCS4B02G136100.2 ... TraesCS4D02G130900.1, TraesCS5A02G153500.1, TraesCS5B02G152300.1, TraesCS5D02G158800.1
Poaceae	Zea mays	4	Zm00001eb094250_P002, Zm00001eb163250_P001 ... Zm00001eb194950_P002, Zm00001eb404830_P001
Poaceae	Zoysia japonica	4	nbis-gene-23331, nbis-gene-25848, nbis-gene-26945 ... nbis-gene-26947
Poaceae	Zoysia macrostachya	2	Zma_g18320, Zma_g24589
Portulacaceae	Portulaca oleracea	6	evm.TU.LG03.1799, evm.TU.LG05.153, evm.TU.LG14.80 ... evm.TU.LG19.1068, evm.TU.LG24.1071, evm.TU.LG25.1161
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g37080, gene.Posoc07g13940
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.329, evm.TU.Scaffold_12_RagTag.112 ... evm.TU.Scaffold_12_RagTag.113, evm.TU.Scaffold_13_RagTag.947
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-14081, nbisL1-mrna-24686, nbisL1-mrna-30070
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-15482, nbisL1-mrna-15674, nbisL1-mrna-5993
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-16309, nbisL1-mrna-19418
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000005l.155, evm.TU.utg000015l.558 ... evm.TU.utg000027l.500
Rhizophoraceae	Kandelia obovata	3	Maker00010105, Maker00015945, Maker00018225
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-446, nbisL1-mrna-4464, nbisL1-mrna-5494
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-11646, nbisL1-mrna-18886, nbisL1-mrna-20843
Salicaceae	Populus euphratica	4	populus_peu01746, populus_peu06568, populus_peu20447 ... populus_peu36065
Solanaceae	Lycium barbarum	3	gene-LOC132609050, gene-LOC132637922, gene-LOC132640404
Solanaceae	Solanum chilense	2	SOLCI004895900, SOLCI006013500
Solanaceae	Solanum pennellii	3	gene-LOC107014039, gene-LOC107020217, gene-LOC107023023
Tamaricaceae	Reaumuria soongarica	2	gene_10709, gene_3007
Tamaricaceae	Tamarix chinensis	2	TC01G1157, TC11G1229
Zosteraceae	Zostera marina	3	Zosma02g07230.v3.1, Zosma02g21680.v3.1, Zosma03g13790.v3.1