Basic Information
Locus ID:
gene:ENSEOMG00000036118
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Belongs to the UPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 26 | 6956551 | 6957404 | + | gene:ENSEOMG00000036118 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 31,830.49 Da | 48.11 | 90.37 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00475 | Cis_IPPS | 35 | 261 | 6.62905E-82 | IPR001441 |
| Pfam | PF01255 | Putative undecaprenyl diphosphate synthase | 39 | 262 | 5.6E-67 | IPR001441 |
| SUPERFAMILY | SSF64005 | Undecaprenyl diphosphate synthase | 27 | 261 | 2.35E-64 | IPR036424 |
| Gene3D | G3DSA:3.40.1180.10 | - | 3 | 262 | 5.6E-81 | IPR036424 |
| TIGRFAM | TIGR00055 | uppS: di-trans,poly-cis-decaprenylcistransferase | 32 | 261 | 4.1E-61 | IPR001441 |
| ProSitePatterns | PS01066 | Undecaprenyl pyrophosphate synthase family signature. | 213 | 230 | - | IPR018520 |
| Hamap | MF_01139 | Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. | 32 | 268 | 26.421015 | IPR001441 |
| Coils | Coil | Coil | 183 | 203 | - | - |
| Coils | Coil | Coil | 131 | 151 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17570.1 | Undecaprenyl pyrophosphate synthetase family protein. | 0 |
| RefSeq | XP_021720283.1 | dehydrodolichyl diphosphate synthase 6-like [Chenopodium quinoa] | 0 |
| K7WCI9 | Dehydrodolichyl diphosphate synthase CPT3 OS=Solanum lycopersicum OX=4081 GN=CPT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KQL9 | Alkyl transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg19928, jg30930, jg30931, jg7050 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_13369, gene_13370, gene_13491, gene_4083 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000200, Ah028584 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g121040 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg24997, Sbi_jg26784, Sbi_jg31448, Sbi_jg33782 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg19751, Seu_jg25470, Seu_jg8475 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011714, GOSA_00019558 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl53157, Sgl54413, Sgl58427, Sgl59742, Sgl73641, Sgl77104 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000004155, gene:ENSEOMG00000008873 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0026250, CQ.Regalona.r1.5BG0027800 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30058840 |
| Apiaceae | Apium graveolens | 4 | Ag2G01333, Ag3G00162, Ag3G00163, Ag6G00968 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G003370, COCNU_10G007510 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103697150, gene-LOC103711167, gene-LOC103720169 ... |
| Asparagaceae | Asparagus officinalis | 7 | AsparagusV1_01.2654.V1.1, AsparagusV1_02.730.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri17G19691, Ftri18G06108, Ftri6G14049, Ftri9G31236 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G17570.1, AT5G60500.1, AT5G60510.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014376m.g.v1.0, Thhalv10023082m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g09720.v2.2, Sp6g22080.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g013910.2N, BniB02g040240.2N, BniB03g065620.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq02G1560, Ceq06G0065, Ceq06G0066 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G1628, Cgl06G0072, Cgl06G0073 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g00400 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0623s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g04320, gene.Thate06g18350, gene.Thate07g05850 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9722 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2870, evm.TU.LG09.935 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022417 |
| Poaceae | Echinochloa crus-galli | 6 | AH05.3562, BH05.1238, BH06.508, CH01.2737, CH05.1465 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0509930, gene-QOZ80_6BG0462260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0656150.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005574, gene-QYE76_028398 |
| Poaceae | Oryza coarctata | 2 | Oco11G003190, Oco12G003160 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g07120.1, LOC_Os07g41680.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G358700, gene-BS78_10G056800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701900 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G010560, Chr07G001370, Chr11G022050 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G258200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG015220, gene_TRIDC7BG004560 |
| Poaceae | Triticum aestivum | 4 | TraesCS7A02G130000.1, TraesCS7B02G030000.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb375240_P001, Zm00001eb375270_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34809, nbis-gene-5090 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29170, Zma_g31419 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.1189, evm.TU.LG04.1606, evm.TU.LG09.783 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g00630 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.35, evm.TU.Scaffold_6_RagTag.2188 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-119, nbisL1-mrna-120, nbisL1-mrna-121 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15401 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5843 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000011l.554, add.evm.TU.utg000019l.503 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006824 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-23071, nbisL1-mrna-6603 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2485, nbisL1-mrna-2930 |
| Salicaceae | Populus euphratica | 4 | populus_peu14019, populus_peu14021, populus_peu23225 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132621784, gene-LOC132622694, gene-LOC132628036 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI002843300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012648 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.28401_chr04_-, gene_11306 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2386 |
| Zosteraceae | Zostera marina | 2 | Zosma03g11240.v3.1, Zosma06g30470.v3.1 |