Basic Information
Locus ID:
gene:ENSEOMG00000035845
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 25 | 7478808 | 7484584 | - | gene:ENSEOMG00000035845 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 137,018.16 Da | 33.25 | 94.43 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 14 | 322 | 7.88921E-74 | - |
| Pfam | PF04053 | Coatomer WD associated region | 345 | 773 | 5.6E-131 | IPR006692 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 832 | 1218 | 4.0E-158 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 89 | 126 | 2.6E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 131 | 168 | 1.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 50 | 84 | 4.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 203 | 236 | 1.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 246 | 281 | 2.5E-5 | IPR001680 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 250 | 593 | 2.47E-16 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 320 | 2.3E-73 | IPR036322 |
| Gene3D | G3DSA:1.25.40.470 | - | 645 | 817 | 1.0E-65 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 324 | 2.3E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 45 | 84 | 4.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 242 | 281 | 4.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 87 | 126 | 6.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 322 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 129 | 168 | 7.8E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3 | 42 | 0.46 | IPR001680 |
| SMART | SM00320 | WD40_4 | 198 | 237 | 2.8E-6 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 4 | 1214 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 94 | 126 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 52 | 93 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 136 | 169 | 12.631039 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 94 | 135 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 205 | 246 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 52 | 84 | 10.442869 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 249 | 281 | 11.73468 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 136 | 169 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 205 | 239 | 10.785595 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 249 | 290 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 10 | 51 | 8.703868 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 155 | 169 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 268 | 282 | 3.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 113 | 127 | 3.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 155 | 169 | 3.9E-7 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_021758357.1 | coatomer subunit alpha-2-like [Chenopodium quinoa] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MSK2 | Coatomer subunit alpha OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology