Basic Information
Locus ID:
gene:ENSEOMG00000034526
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 25 | 11287739 | 11289009 | + | gene:ENSEOMG00000034526 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 17,779.23 Da | 44.78 | 84.43 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 102 | 151 | 5.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 102 | 156 | 1.18E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 156 | 1.0E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 103 | 150 | 9.4E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 103 | 151 | 12.135206 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_021768552.1 | E3 ubiquitin-protein ligase ATL31-like [Chenopodium quinoa] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L790 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 5 | Ah024091, Ah024096, Ah024100, Ah024103, Ah028031 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g106860 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51260, Sgl56564 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000034526, gene:ENSEOMG00000035380 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0013220 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30983 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG03.1865 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g37240 |
| Zosteraceae | Zostera marina | 1 | Zosma01g36610.v3.1 |