Basic Information
Locus ID:
gene:ENSEOMG00000034164
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 24 | 15409263 | 15437322 | + | gene:ENSEOMG00000034164 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.49 | 75,861.23 Da | 52.51 | 87.91 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 228 | 365 | 5.6E-8 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 645 | 680 | 4.63E-8 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 129 | 391 | 3.5E-17 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 607 | 683 | 1.2E-5 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 133 | 396 | 1.7E-26 | IPR023214 |
| SMART | SM00577 | forpap2 | 238 | 375 | 1.4E-11 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 136 | 388 | 18.065453 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 646 | 682 | 10.557354 | IPR014720 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_021718885.1 | RNA polymerase II C-terminal domain phosphatase-like 2 [Chenopodium quinoa] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A803NAQ6 | protein-serine/threonine phosphatase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology