Basic Information
Locus ID:
gene:ENSEOMG00000033299
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 24 | 37325703 | 37329720 | + | gene:ENSEOMG00000033299 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 77,384.34 Da | 59.13 | 82.11 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 232 | 366 | 1.17484E-20 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 255 | 365 | 3.0E-7 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 134 | 392 | 9.07E-21 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 134 | 396 | 4.2E-26 | IPR023214 |
| SMART | SM00577 | forpap2 | 199 | 375 | 1.6E-13 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 140 | 388 | 15.218622 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 634 | 648 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 628 | 691 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 677 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_021740546.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Chenopodium quinoa] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LPU6 | protein-serine/threonine phosphatase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology