Basic Information
Locus ID:
gene:ENSEOMG00000032713
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 24 | 37332111 | 37336331 | + | gene:ENSEOMG00000032713 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 25,651.63 Da | 46.31 | 71.36 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 121 | 186 | 4.2E-8 | IPR014720 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 17 | 55 | 2.8E-4 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 18 | 55 | 8.1E-7 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 116 | 191 | 6.62E-14 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 118 | 190 | 1.7E-10 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 13 | 71 | 4.0E-5 | - |
| SMART | SM00358 | DRBM_3 | 1 | 56 | 0.43 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 119 | 187 | 4.0E-6 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 118 | 188 | 13.08209 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 20 | 57 | 8.785185 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 209 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_021740549.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X4 [Chenopodium quinoa] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LPU6 | protein-serine/threonine phosphatase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology