halophFGD

Basic Information

Locus ID: gene:ENSEOMG00000032708

Species & Taxonomic ID: Chenopodium album & 3559

Genome Assembly: GCA_948465745.1

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
25	9219157	9219623	-	gene:ENSEOMG00000032708

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.90	12,366.08 Da	17.49	80.94	-0.40

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14432	DYW family of nucleic acid deaminases	5	97	6.9E-26	IPR032867

Gene Ontology

Molecular Function:

GO:0008270 (zinc ion binding)

KEGG Pathway

KO Term:

K13989 (Derlin-2/3)

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G15720.1	Tetratricopeptide repeat (TPR)-like superfamily protein.
RefSeq	XP_021740337.1	pentatricopeptide repeat-containing protein At4g15720-like [Chenopodium quinoa]
Swiss-Prot	Q8VYH0	Pentatricopeptide repeat-containing protein At4g15720 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H1 PE=2 SV=1
TrEMBL	A0A803MEI0	DYW_deaminase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg13119, jg32704
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg20102, Sbi_jg24762, Sbi_jg30858, Sbi_jg44747 ... Sbi_jg50753
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000001426, gene:ENSEOMG00000001999 ... gene:ENSEOMG00000003851, gene:ENSEOMG00000022378, gene:ENSEOMG00000030940, gene:ENSEOMG00000032708, gene:ENSEOMG00000047428
Anacardiaceae	Pistacia vera	2	pistato.v30018980, pistato.v30187750
Apiaceae	Apium graveolens	1	Ag4G01043
Arecaceae	Cocos nucifera	2	COCNU_14G009990, scaffold000429G000160
Arecaceae	Phoenix dactylifera	3	gene-LOC103721177, gene-LOC120105606, gene-LOC120109483
Asparagaceae	Asparagus officinalis	8	AsparagusV1_01.538.V1.1, AsparagusV1_03.1919.V1.1 ... AsparagusV1_03.2949.V1.1, AsparagusV1_03.827.V1.1, AsparagusV1_04.701.V1.1, AsparagusV1_07.1101.V1.1, AsparagusV1_08.1008.V1.1, AsparagusV1_10.1205.V1.1
Brassicaceae	Arabidopsis thaliana	1	AT1G47580.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10011729m.g.v1.0, Thhalv10012004m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g34620.v2.2
Brassicaceae	Brassica nigra	5	BniB04g030440.2N, BniB07g008840.2N, BniB07g008950.2N ... BniB07g008980.2N, BniB08g072120.2N
Casuarinaceae	Casuarina glauca	1	Cgl04G1234
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno09g07210
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1341
Plantaginaceae	Plantago ovata	2	Pov_00029399, Pov_00031471
Plumbaginaceae	Limonium bicolor	1	Lb8G35834
Poaceae	Echinochloa crus-galli	3	AH01.27, BH01.605, CH01.587
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0214540, gene-QOZ80_3BG0259760 ... gene-QOZ80_4BG0344550, gene-QOZ80_6AG0544960
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.5HG0429830.1.CDS1 ... HORVU.MOREX.r3.5HG0513180.1.CDS1, HORVU.MOREX.r3.7HG0673620.1.CDS1
Poaceae	Lolium multiflorum	1	gene-QYE76_061613
Poaceae	Oryza coarctata	3	Oco01G010650, Oco05G024590, Oco06G025530
Poaceae	Oryza sativa	1	LOC_Os03g55840.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G068200, gene-BS78_06G128500
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0305355, Pt_Ctg00194
Poaceae	Sporobolus alterniflorus	7	Chr01G004210, Chr01G024700, Chr04G029450, Chr12G036490 ... Chr26G008510, Chr26G008530, Chr28G001320
Poaceae	Thinopyrum elongatum	1	Tel5E01G638000
Poaceae	Triticum dicoccoides	2	gene_TRIDC5AG058640, gene_TRIDC5BG062800
Poaceae	Triticum aestivum	3	TraesCS2D02G002900.1.cds1, TraesCS5A02G403500.1.cds1 ... TraesCS5D02G413500.1.cds1
Poaceae	Zea mays	1	Zm00001eb213980_P001
Poaceae	Zoysia japonica	3	nbis-gene-16304, nbis-gene-22668, nbis-gene-5666
Poaceae	Zoysia macrostachya	1	Zma_g2697
Posidoniaceae	Posidonia oceanica	1	gene.Posoc04g06660
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-12099
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000008l.259
Salicaceae	Populus euphratica	3	populus_peu10497, populus_peu26565, populus_peu31937
Tamaricaceae	Tamarix chinensis	2	TC01G1380, TC01G1879
Zosteraceae	Zostera marina	1	Zosma01g01320.v3.1