Basic Information
Locus ID:
gene:ENSEOMG00000032587
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 24 | 7384610 | 7393233 | + | gene:ENSEOMG00000032587 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 46,016.94 Da | 51.85 | 70.19 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 61 | 131 | 5.62509E-35 | - |
| CDD | cd12354 | RRM3_TIA1_like | 265 | 339 | 4.7682E-35 | - |
| CDD | cd12619 | RRM2_PUB1 | 145 | 219 | 2.7697E-51 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 267 | 332 | 8.1E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 146 | 216 | 7.3E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 61 | 127 | 2.7E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 136 | 224 | 2.55E-26 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 254 | 343 | 5.7E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 48 | 137 | 1.06E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 141 | 1.5E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 243 | 343 | 4.0E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 142 | 223 | 1.5E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 266 | 335 | 1.5E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 145 | 218 | 1.7E-22 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 60 | 129 | 3.5E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 144 | 222 | 17.25057 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 265 | 339 | 15.050424 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 59 | 133 | 15.306254 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 261 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021756703.1 | oligouridylate-binding protein 1-like [Chenopodium quinoa] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QES4 | Oligouridylate-binding protein 1-like OS=Spinacia oleracea OX=3562 GN=SOVF_192880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology