Basic Information
Locus ID:
gene:ENSEOMG00000032497
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 24 | 4934920 | 4942715 | + | gene:ENSEOMG00000032497 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 63,168.36 Da | 26.87 | 98.95 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 439 | 539 | 4.60307E-28 | - |
| CDD | cd00030 | C2 | 264 | 366 | 9.196E-25 | - |
| Pfam | PF00168 | C2 domain | 437 | 539 | 6.3E-26 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 248 | 1.9E-16 | IPR039010 |
| Pfam | PF00168 | C2 domain | 263 | 366 | 7.3E-22 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 434 | 555 | 2.28E-33 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 391 | 3.84E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 424 | 555 | 2.4E-35 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 255 | 390 | 7.8E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 263 | 363 | 1.0E-20 | IPR000008 |
| SMART | SM00239 | C2_3c | 438 | 536 | 4.8E-25 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 19.611294 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 420 | 537 | 21.542955 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 29.915627 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 454 | 466 | 8.0E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 502 | 510 | 8.0E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 480 | 493 | 8.0E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_021741801.1 | synaptotagmin-5-like [Chenopodium quinoa] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QXK9 | Synaptotagmin-5-like OS=Spinacia oleracea OX=3562 GN=SOVF_135070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology