Basic Information
Locus ID:
gene:ENSEOMG00000032296
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 24 | 37048112 | 37058843 | + | gene:ENSEOMG00000032296 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 128,752.40 Da | 46.37 | 81.32 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 469 | 774 | 2.03706E-89 | - |
| CDD | cd18793 | SF2_C_SNF | 977 | 1117 | 3.59227E-56 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 890 | 926 | 8.1E-6 | IPR018957 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1008 | 1107 | 6.3E-16 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 489 | 852 | 3.0E-70 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 783 | 1164 | 2.1E-58 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 454 | 774 | 8.75E-44 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 886 | 933 | 3.95E-10 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 789 | 1164 | 2.1E-67 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 883 | 941 | 3.7E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 450 | 787 | 2.5E-52 | IPR038718 |
| SMART | SM00490 | helicmild6 | 1024 | 1107 | 1.8E-19 | IPR001650 |
| SMART | SM00184 | ring_2 | 890 | 928 | 3.5E-4 | IPR001841 |
| SMART | SM00487 | ultradead3 | 465 | 753 | 1.9E-27 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1001 | 1160 | 15.433556 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 890 | 926 | 10.600894 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 484 | 736 | 13.451586 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 905 | 914 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 627 | 666 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 646 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021740504.1 | helicase-like transcription factor CHR28 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LPR1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology