Basic Information
Locus ID:
gene:ENSEOMG00000029868
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 23 | 27639768 | 27648281 | + | gene:ENSEOMG00000029868 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.07 | 117,815.58 Da | 67.45 | 55.86 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 623 | 752 | 5.49614E-61 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 635 | 743 | 5.3E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 428 | 598 | 4.9E-49 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 476 | 758 | 5.93E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 613 | 784 | 5.2E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 378 | 612 | 7.4E-90 | IPR027417 |
| SMART | SM00487 | ultradead3 | 423 | 626 | 2.1E-65 | IPR014001 |
| SMART | SM00490 | helicmild6 | 659 | 743 | 6.0E-34 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 404 | 432 | 11.408521 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 638 | 782 | 25.347542 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 435 | 609 | 31.320377 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 555 | 563 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 992 | 1020 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 857 | 872 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 961 | 991 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 901 | 936 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 937 | 960 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 808 | 1051 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_021757000.1 | DEAD-box ATP-dependent RNA helicase 40-like [Chenopodium quinoa] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QDW2 | DEAD-box ATP-dependent RNA helicase 40 OS=Spinacia oleracea OX=3562 GN=SOVF_190160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology