Basic Information
Locus ID:
gene:ENSEOMG00000029648
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 22 | 483333 | 489680 | - | gene:ENSEOMG00000029648 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 97,815.32 Da | 38.67 | 76.65 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 413 | 467 | 1.58121E-27 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 472 | 834 | 6.1E-34 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 414 | 466 | 1.4E-7 | IPR023780 |
| Pfam | PF01426 | BAH domain | 139 | 245 | 4.5E-8 | IPR001025 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 402 | 472 | 1.29E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 300 | 835 | 4.16E-77 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 283 | 393 | 8.9E-14 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 630 | 801 | 3.8E-220 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 413 | 853 | 3.8E-220 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 70 | 241 | 8.3E-44 | IPR043151 |
| SMART | SM00298 | chromo_7 | 413 | 470 | 4.4E-5 | IPR000953 |
| SMART | SM00439 | BAH_4 | 135 | 256 | 1.2E-12 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 480 | 832 | 3.2E-30 | IPR001525 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 301 | 842 | 43.979248 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 135 | 256 | 15.717141 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 414 | 455 | 12.032601 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 482 | 494 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 525 | 539 | 1.8E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 302 | 318 | 1.8E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 571 | 584 | 1.8E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_021728853.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KLX9 | Cytosine-specific methyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology