Basic Information
Locus ID:
gene:ENSEOMG00000029498
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 23 | 38789728 | 38796056 | + | gene:ENSEOMG00000029498 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 47,754.26 Da | 49.50 | 77.02 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 252 | 420 | 2.20492E-109 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 13 | 81 | 9.5E-7 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 251 | 349 | 6.3E-17 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 253 | 376 | 2.35E-18 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 4 | 105 | 2.8E-23 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 236 | 420 | 1.3E-69 | - |
| SMART | SM00232 | pad1_6 | 245 | 373 | 1.8E-13 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 246 | 376 | 30.104366 | IPR037518 |
| Coils | Coil | Coil | 68 | 88 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_021750517.1 | AMSH-like ubiquitin thioesterase 3 [Chenopodium quinoa] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803NBX0 | AMSH-like ubiquitin thioesterase 3 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology