Basic Information
Locus ID:
gene:ENSEOMG00000029448
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 23 | 22360901 | 22365069 | + | gene:ENSEOMG00000029448 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 69,967.55 Da | 38.73 | 105.43 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 258 | 300 | 9.04061E-29 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 381 | 420 | 2.1E-10 | IPR000225 |
| Pfam | PF04564 | U-box domain | 254 | 324 | 3.3E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 464 | 502 | 7.0E-6 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 253 | 329 | 7.07E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 350 | 626 | 3.46E-48 | IPR016024 |
| Gene3D | G3DSA:1.20.930.20 | - | 11 | 128 | 2.8E-11 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 425 | 528 | 5.7E-24 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 254 | 327 | 7.9E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 529 | 631 | 2.4E-13 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 334 | 424 | 1.2E-12 | IPR011989 |
| SMART | SM00185 | arm_5 | 381 | 421 | 3.4E-6 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 257 | 320 | 3.2E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 422 | 462 | 0.38 | IPR000225 |
| SMART | SM00185 | arm_5 | 463 | 503 | 0.058 | IPR000225 |
| SMART | SM00185 | arm_5 | 504 | 544 | 80.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 545 | 585 | 240.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 433 | 475 | 9.0474 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 253 | 327 | 44.477947 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 392 | 434 | 13.9474 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_021717676.1 | U-box domain-containing protein 14 [Chenopodium quinoa] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803NA48 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology