Basic Information
Locus ID:
gene:ENSEOMG00000029189
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 22 | 34160234 | 34162427 | + | gene:ENSEOMG00000029189 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 67,547.41 Da | 43.53 | 71.41 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 379 | 400 | 1.1 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 305 | 334 | 2.9E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 274 | 302 | 0.022 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 472 | 583 | 3.6E-37 | IPR032867 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 205 | 366 | 1.8E-26 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 305 | 337 | 1.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 274 | 302 | 0.002 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 302 | 336 | 10.55579 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32450.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_021763550.1 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Chenopodium quinoa] | 0 |
| Q9SUU7 | Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H63 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LAU6 | DYW_deaminase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology