Basic Information
Locus ID:
gene:ENSEOMG00000028728
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 22 | 21746671 | 21752042 | - | gene:ENSEOMG00000028728 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.89 | 59,795.07 Da | 56.85 | 71.09 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 238 | 367 | 3.08864E-65 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 43 | 213 | 3.3E-50 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 250 | 358 | 3.1E-34 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 91 | 374 | 4.73E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 4 | 227 | 2.1E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 228 | 399 | 1.0E-60 | IPR027417 |
| SMART | SM00487 | ultradead3 | 38 | 241 | 2.9E-63 | IPR014001 |
| SMART | SM00490 | helicmild6 | 278 | 358 | 1.4E-34 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 253 | 397 | 25.885315 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 50 | 224 | 29.723377 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 170 | 178 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 450 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.2 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_021737705.1 | ATP-dependent RNA helicase-like protein DB10 [Chenopodium quinoa] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803NBD2 | DEAD-box ATP-dependent RNA helicase 46 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology