Basic Information
Locus ID:
gene:ENSEOMG00000027535
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Agamous-like MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 20 | 8414970 | 8420898 | + | gene:ENSEOMG00000027535 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 24,817.08 Da | 46.62 | 86.65 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 72 | 1.2097E-41 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 5.6E-28 | IPR002100 |
| Pfam | PF01486 | K-box region | 88 | 173 | 6.4E-22 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 74 | 3.53E-33 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 105 | 1.1E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 7.5E-42 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 89 | 179 | 13.004219 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.917196 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.4E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.4E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.4E-30 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 192 | - | - |
| Coils | Coil | Coil | 152 | 172 | - | - |
| Coils | Coil | Coil | 89 | 116 | - | - |
| Coils | Coil | Coil | 123 | 146 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_021754068.1 | MADS-box protein SOC1-like isoform X1 [Chenopodium quinoa] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LQT7 | MADS-box protein SOC1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology