Basic Information
Locus ID:
gene:ENSEOMG00000026795
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 20 | 26504533 | 26511203 | - | gene:ENSEOMG00000026795 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 41,313.50 Da | 42.49 | 85.69 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 278 | 306 | 1.6E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 277 | 307 | 2.35E-8 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 272 | 308 | 6.8E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 309 | 337 | 5.1E-8 | - |
| SMART | SM00547 | zf_4 | 280 | 304 | 7.8E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 243 | 266 | 4.9 | IPR001876 |
| SMART | SM00547 | zf_4 | 313 | 337 | 0.0016 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 311 | 336 | 8.422492 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 278 | 307 | 10.342166 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 282 | 301 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 315 | 334 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_021759303.1 | zinc finger protein VAR3, chloroplastic-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9QPR9 | Zinc finger protein VAR3, chloroplastic OS=Spinacia oleracea OX=3562 GN=SOVF_155050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology