Basic Information
Locus ID:
gene:ENSEOMG00000026627
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 21 | 5829745 | 5834092 | - | gene:ENSEOMG00000026627 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 41,295.17 Da | 49.74 | 88.91 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 50 | 342 | 1.09589E-52 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 96 | 130 | 0.0058 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 299 | 0.037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 342 | 2.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 172 | 0.0023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 49 | 84 | 1.2E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 44 | 342 | 1.4E-67 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 42 | 306 | 3.1E-62 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 307 | 361 | 2.0E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 8.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 214 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 343 | 9.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 216 | 254 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 300 | 0.84 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 1.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 46 | 85 | 3.2E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 310 | 352 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 139 | 14.251289 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 53 | 86 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 310 | 345 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 147 | 174 | 9.472486 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 53 | 86 | 10.785595 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 135 | 10.864685 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 72 | 86 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 159 | 173 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 72 | 86 | 2.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 117 | 131 | 2.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 330 | 344 | 2.9E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021728000.1 | uncharacterized WD repeat-containing protein C343.04c-like [Chenopodium quinoa] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KWW7 | WD repeat-containing protein 26 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology