Basic Information
Locus ID:
gene:ENSEOMG00000026581
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 22 | 14870977 | 14871255 | + | gene:ENSEOMG00000026581 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 10,442.12 Da | 85.45 | 70.98 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 33 | 79 | 2.50902E-6 | - |
| Pfam | PF13639 | Ring finger domain | 32 | 79 | 2.2E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 27 | 85 | 6.85E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 90 | 5.1E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 33 | 78 | 6.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 33 | 79 | 12.828597 | IPR001841 |
| Coils | Coil | Coil | 9 | 29 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019104916.2 | E3 ubiquitin-protein ligase SIS3 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0N9QA29 | RING-finger domain containing protein OS=Chrysochromulina ericina virus OX=455364 GN=ceV_053 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah033733 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg1762 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2989 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl73022 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000026581 |