Basic Information
Locus ID:
gene:ENSEOMG00000025935
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Short Name:
CMT1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 21 | 2525829 | 2531174 | - | gene:ENSEOMG00000025935 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 86,734.39 Da | 35.76 | 83.38 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 325 | 376 | 2.37441E-28 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 326 | 370 | 2.8E-7 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 385 | 731 | 7.4E-32 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 311 | 380 | 2.75E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 219 | 733 | 4.24E-73 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 27 | 166 | 5.6E-26 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 223 | 741 | 4.7E-219 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 531 | 700 | 4.7E-219 | - |
| SMART | SM00439 | BAH_4 | 76 | 182 | 3.6E-4 | IPR001025 |
| SMART | SM00298 | chromo_7 | 325 | 383 | 4.0E-9 | IPR000953 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 326 | 375 | 10.512201 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 221 | 741 | 42.781448 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 70 | 182 | 13.522964 | IPR001025 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 222 | 238 | 8.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 434 | 448 | 8.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 480 | 493 | 8.2E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 215 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_021714306.1 | DNA (cytosine-5)-methyltransferase 1-like [Chenopodium quinoa] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KXW9 | Cytosine-specific methyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology