Basic Information
Locus ID:
gene:ENSEOMG00000025916
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
protein At4g01020, chloroplastic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 21 | 9662677 | 9664905 | + | gene:ENSEOMG00000025916 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 28,417.96 Da | 54.52 | 93.19 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 139 | 218 | 1.65E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 221 | 1.4E-8 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 144 | 186 | 9.214112 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 140 | 251 | 14.515287 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 160 | 169 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10370.1 | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021758648.1 | ATP-dependent RNA helicase DEAH12, chloroplastic-like [Chenopodium quinoa] | 0 |
| F4KGU4 | ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803KW59 | RNA helicase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000003636, gene:ENSEOMG00000025916 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717971 |
| Brassicaceae | Brassica nigra | 1 | BniB01g033480.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g07910 |