Basic Information
Locus ID:
gene:ENSEOMG00000025609
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 20 | 33006539 | 33007170 | - | gene:ENSEOMG00000025609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.43 | 19,296.92 Da | 36.35 | 98.71 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 29 | 91 | 2.67623E-15 | IPR002048 |
| CDD | cd00051 | EFh | 104 | 166 | 4.68779E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 28 | 89 | 2.8E-11 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 104 | 165 | 6.8E-12 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 12 | 166 | 8.0E-42 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 98 | 173 | 4.6E-23 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 15 | 97 | 9.2E-20 | - |
| SMART | SM00054 | efh_1 | 104 | 132 | 2.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 65 | 93 | 0.85 | IPR002048 |
| SMART | SM00054 | efh_1 | 140 | 168 | 5.1E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 29 | 57 | 0.017 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 100 | 135 | 14.122869 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 136 | 171 | 12.867577 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 25 | 60 | 13.927603 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 61 | 96 | 11.082272 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 113 | 125 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 149 | 161 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 74 | 86 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 38 | 50 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_021731344.1 | probable calcium-binding protein CML15 [Chenopodium quinoa] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9R3U8 | Calcium-binding protein CML16 OS=Spinacia oleracea OX=3562 GN=SOVF_109880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology