Basic Information
Locus ID:
gene:ENSEOMG00000025171
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Short Name:
UBP12
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 20 | 12563307 | 12588272 | - | gene:ENSEOMG00000025171 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 131,856.48 Da | 40.26 | 79.81 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 60 | 183 | 1.97841E-38 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 201 | 529 | 1.14982E-166 | - |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 628 | 880 | 1.5E-77 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 203 | 524 | 8.6E-47 | IPR001394 |
| Pfam | PF00917 | MATH domain | 65 | 185 | 2.7E-19 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 890 | 1102 | 7.5E-56 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 198 | 555 | 3.73E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 56 | 189 | 1.11E-41 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 806 | 903 | 1.2E-27 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 200 | 528 | 3.2E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 688 | 805 | 4.2E-45 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 56 | 199 | 4.2E-51 | IPR008974 |
| SMART | SM00061 | math_3 | 60 | 164 | 3.6E-19 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 58 | 183 | 38.085037 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 203 | 527 | 39.688412 | IPR028889 |
| ProSitePatterns | PS00304 | Small, acid-soluble spore proteins, alpha/beta type, signature 1. | 614 | 623 | - | IPR018126 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 443 | 460 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 204 | 219 | - | IPR018200 |
| Coils | Coil | Coil | 543 | 563 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021721291.1 | ubiquitin carboxyl-terminal hydrolase 13-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803N0C5 | ubiquitinyl hydrolase 1 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology