Basic Information
Locus ID:
gene:ENSEOMG00000025117
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 21 | 2151577 | 2199122 | - | gene:ENSEOMG00000025117 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 448,482.72 Da | 43.53 | 92.99 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2242 | 2385 | 6.1E-10 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1995 | 2161 | 1.2E-12 | IPR009291 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 9 | 116 | 7.9E-30 | IPR026854 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3235 | 3384 | 1.9E-7 | IPR009543 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 126 | 381 | 2.6E-65 | IPR031646 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 576 | 802 | 1.9E-33 | IPR031642 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_021714352.1 | uncharacterized protein LOC110682332 isoform X4 [Chenopodium quinoa] | 0 |
| A1Z713 | Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KY05 | C2 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology