Basic Information
Locus ID:
gene:ENSEOMG00000024994
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 20 | 38102631 | 38106867 | - | gene:ENSEOMG00000024994 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 41,427.82 Da | 42.49 | 85.88 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 28 | 315 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 42 | 316 | 1.2E-81 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 23 | 320 | 2.16E-109 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 21 | 323 | 5.1E-117 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 10 | 322 | 9.4E-171 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 232 | 250 | 2.3E-27 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 44 | 61 | 2.3E-27 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 215 | 228 | 2.3E-27 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 137 | 160 | 9.5E-25 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 254 | 264 | 9.5E-25 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 169 | 184 | 9.5E-25 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 77 | 95 | 2.3E-27 | IPR003084 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_021762854.1 | histone deacetylase 6-like [Chenopodium quinoa] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L8G9 | Histone deacetylase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology