Basic Information
Locus ID:
gene:ENSEOMG00000024504
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 21 | 32860003 | 32863416 | - | gene:ENSEOMG00000024504 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 65,625.14 Da | 29.90 | 76.34 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 1 | 233 | 7.0102E-55 | - |
| CDD | cd10317 | RGL4_C | 383 | 563 | 5.16931E-51 | - |
| CDD | cd10316 | RGL4_M | 273 | 370 | 2.11015E-32 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 298 | 367 | 4.0E-24 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 1 | 143 | 1.2E-36 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 381 | 562 | 1.5E-51 | IPR029411 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 271 | 368 | 1.12E-11 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 379 | 563 | 4.12E-45 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 3 | 216 | 4.71E-8 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1120 | - | 270 | 369 | 4.9E-12 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 378 | 563 | 4.8E-18 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 1 | 239 | 5.6E-11 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_021731282.1 | uncharacterized protein LOC110698188 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MAW7 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology