Basic Information
Locus ID:
gene:ENSEOMG00000024448
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 20 | 16531977 | 16536007 | + | gene:ENSEOMG00000024448 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 108,751.79 Da | 47.38 | 66.21 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 505 | 4.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 576 | 612 | 1.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 759 | 783 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 618 | 654 | 0.0027 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 468 | 788 | 2.2E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 454 | 553 | 1.3E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 559 | 810 | 5.7E-43 | IPR015943 |
| SMART | SM00320 | WD40_4 | 615 | 654 | 9.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 695 | 740 | 0.64 | IPR001680 |
| SMART | SM00320 | WD40_4 | 741 | 783 | 0.03 | IPR001680 |
| SMART | SM00320 | WD40_4 | 574 | 612 | 1.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 467 | 506 | 8.8E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 621 | 655 | 10.838322 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 474 | 508 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 474 | 508 | 11.286501 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 581 | 614 | 11.049229 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 621 | 655 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 581 | 621 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 762 | 792 | 9.305395 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 599 | 613 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 493 | 507 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 599 | 613 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 641 | 655 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 493 | 507 | 1.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 831 | 846 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 892 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021750711.1 | WD repeat-containing protein 44-like [Chenopodium quinoa] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N610 | WD_REPEATS_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology