Basic Information
Locus ID:
gene:ENSEOMG00000024105
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 21 | 12995353 | 13003290 | - | gene:ENSEOMG00000024105 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 48,471.77 Da | 54.41 | 82.75 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00627 | UBA/TS-N domain | 115 | 150 | 5.5E-9 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 419 | 452 | 1.3E-12 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 336 | 391 | 4.1E-20 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 2 | 32 | 2.0E-6 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 231 | 268 | 2.7E-11 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 107 | 151 | 4.47E-6 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 333 | 395 | 1.57E-18 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 215 | 274 | 5.38E-10 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 40 | 3.95E-7 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 398 | 458 | 5.8E-13 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 223 | 273 | 5.2E-18 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 106 | 152 | 4.7E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 36 | 2.2E-8 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 327 | 391 | 1.7E-23 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 409 | 457 | 1.0E-20 | - |
| SMART | SM00727 | CBM | 334 | 377 | 2.1E-5 | IPR006636 |
| SMART | SM00165 | uba_6 | 230 | 270 | 0.0069 | IPR015940 |
| SMART | SM00165 | uba_6 | 112 | 152 | 0.076 | IPR015940 |
| SMART | SM00165 | uba_6 | 417 | 454 | 3.9E-6 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 151 | 458 | 1.6E-72 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 228 | 271 | 13.269807 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 110 | 153 | 11.149262 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 414 | 455 | 13.245709 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 35 | 10.440514 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 411 | 427 | 4.3E-27 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 362 | 384 | 4.3E-27 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 428 | 442 | 4.3E-27 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 443 | 458 | 4.3E-27 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 313 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021754080.1 | ubiquitin receptor RAD23d-like isoform X1 [Chenopodium quinoa] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KV23 | Ubiquitin receptor RAD23 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology