HalophFGD

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Basic Information
Locus ID: gene:ENSEOMG00000023952
Species & Taxonomic ID: Chenopodium album & 3559
Genome Assembly: GCA_948465745.1
Description: A Receptor for Ubiquitination Targets
Maps and Mapping Data
Chromosome Start End Strand ID
20 38072978 38074758 - gene:ENSEOMG00000023952
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.54 14,745.03 Da 55.69 93.49 -0.21
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 26 65 2.6E-7 IPR001810
SUPERFAMILY SSF81383 F-box domain 24 95 9.16E-14 IPR036047
Gene3D G3DSA:1.20.1280.50 - 24 62 9.5E-8 -
SMART SM00256 fbox_2 26 66 3.7E-5 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G19930.1 F-box and associated interaction domains-containing protein. 0
RefSeq XP_021734128.1 F-box protein CPR30-like [Chenopodium quinoa] 0
Swiss-Prot O49420 F-box/kelch-repeat protein At4g19930 OS=Arabidopsis thaliana OX=3702 GN=At4g19930 PE=4 SV=1 0
TrEMBL A0A803L8H5 F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Amaranthaceae Atriplex hortensis 3 Ah000544, Ah000545, Ah000548
Amaranthaceae Beta vulgaris 1 BVRB_5g117790
Amaranthaceae Suaeda aralocaspica 1 GOSA_00017365
Amaranthaceae Suaeda glauca 16 Sgl02265, Sgl02998, Sgl03016, Sgl07416, Sgl08131, Sgl33489 ...
Sgl33542, Sgl38889, Sgl54775, Sgl55167, Sgl55168, Sgl55169, Sgl60078, Sgl60417, Sgl71482, Sgl75070
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000005978, gene:ENSEOMG00000020505 ...
gene:ENSEOMG00000022272, gene:ENSEOMG00000023952, gene:ENSEOMG00000031914, gene:ENSEOMG00000044719
Amaranthaceae Chenopodium quinoa 3 CQ.Regalona.r1.5AG0023440, CQ.Regalona.r1.5BG0024920 ...
CQ.Regalona.r1.5BG0024930
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.