Basic Information
Locus ID:
gene:ENSEOMG00000023795
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2 | 6659275 | 6671229 | + | gene:ENSEOMG00000023795 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.82 | 78,195.10 Da | 39.66 | 90.20 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18015 | DEXHc_RecQ1 | 55 | 263 | 8.72141E-130 | - |
| CDD | cd18794 | SF2_C_RecQ | 264 | 399 | 5.34848E-59 | - |
| Pfam | PF00570 | HRDC domain | 594 | 654 | 6.2E-7 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 75 | 243 | 6.8E-19 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 296 | 389 | 1.2E-10 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 402 | 446 | 2.1E-5 | IPR032284 |
| SUPERFAMILY | SSF47819 | HRDC-like | 582 | 665 | 2.35E-5 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 112 | 405 | 1.33E-47 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 474 | 569 | 7.8E-23 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 264 | 452 | 3.3E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 29 | 263 | 1.4E-91 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 587 | 657 | 4.8E-11 | IPR044876 |
| SMART | SM00490 | helicmild6 | 310 | 390 | 2.3E-14 | IPR001650 |
| SMART | SM00487 | ultradead3 | 69 | 272 | 4.7E-28 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 66 | 447 | 5.1E-152 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 81 | 256 | 23.605738 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 585 | 664 | 12.050076 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 281 | 432 | 15.976311 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 667 | 681 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 681 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_021725557.1 | mediator of RNA polymerase II transcription subunit 34-like [Chenopodium quinoa] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MCW2 | ATP-dependent DNA helicase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology