Basic Information
Locus ID:
gene:ENSEOMG00000023578
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 20 | 5317210 | 5320805 | + | gene:ENSEOMG00000023578 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 37,304.20 Da | 56.14 | 70.80 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 62 | 100 | 3.24771E-14 | - |
| CDD | cd03829 | Sina | 178 | 306 | 4.30533E-65 | - |
| Pfam | PF03145 | Seven in absentia protein family | 106 | 305 | 9.6E-76 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 54 | 104 | 7.88E-7 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 117 | 309 | 5.17E-46 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 168 | 1.4E-14 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 169 | 305 | 1.6E-37 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 115 | 1.0E-6 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 64 | 100 | 9.346889 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 117 | 177 | 13.434643 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_021757688.1 | E3 ubiquitin-protein ligase SINAT5-like [Chenopodium quinoa] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RF13 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_074340 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology