Basic Information
Locus ID:
gene:ENSEOMG00000022646
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 19 | 8255381 | 8263386 | - | gene:ENSEOMG00000022646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 87,787.89 Da | 51.60 | 79.11 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 61 | 216 | 1.01217E-28 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 369 | 427 | 3.5E-11 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 427 | 502 | 2.7E-7 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 95 | 163 | 1.9E-8 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 22 | 366 | 4.6E-108 | IPR007012 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 217 | 366 | 2.88E-64 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 369 | 495 | 2.16E-37 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 22 | 215 | 1.49E-51 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 22 | 364 | 2.3E-154 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 54 | 210 | 2.3E-154 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 369 | 484 | 9.9E-28 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 539 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 539 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_021776422.1 | LOW QUALITY PROTEIN: nuclear poly(A) polymerase 4-like [Chenopodium quinoa] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N4A6 | polynucleotide adenylyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology