Basic Information
Locus ID:
gene:ENSEOMG00000022426
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Short Name:
UBP12
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2 | 19517704 | 19538606 | - | gene:ENSEOMG00000022426 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 84,807.77 Da | 41.62 | 79.68 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 4 | 121 | 1.3E-16 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 487 | 698 | 1.3E-57 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 225 | 477 | 5.3E-78 | IPR024729 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 3 | 152 | 2.35E-28 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 285 | 402 | 2.7E-45 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1 | 125 | 4.9E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 403 | 500 | 6.6E-28 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 124 | 16.985743 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 40 | 57 | - | IPR018200 |
| ProSitePatterns | PS00304 | Small, acid-soluble spore proteins, alpha/beta type, signature 1. | 211 | 220 | - | IPR018126 |
| Coils | Coil | Coil | 140 | 160 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_021721291.1 | ubiquitin carboxyl-terminal hydrolase 13-like isoform X1 [Chenopodium quinoa] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RH05 | ubiquitinyl hydrolase 1 OS=Spinacia oleracea OX=3562 GN=SOVF_067780 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology