Basic Information
Locus ID:
gene:ENSEOMG00000022031
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
RNase H family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 19 | 3076305 | 3080048 | - | gene:ENSEOMG00000022031 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 144,244.47 Da | 39.70 | 85.98 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 1122 | 1240 | 2.36473E-13 | IPR044730 |
| CDD | cd01650 | RT_nLTR_like | 386 | 653 | 3.4478E-47 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 393 | 633 | 2.3E-39 | IPR000477 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 915 | 1002 | 1.1E-15 | IPR026960 |
| Pfam | PF13456 | Reverse transcriptase-like | 1122 | 1242 | 4.9E-12 | IPR002156 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 340 | 626 | 3.62E-19 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 5 | 114 | 2.06E-12 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1119 | 1246 | 3.16E-10 | IPR012337 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 2 | 115 | 2.2E-9 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 1118 | 1245 | 4.2E-13 | IPR036397 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 373 | 652 | 14.697333 | IPR000477 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1136 | 1245 | 9.507511 | IPR002156 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G43760.1 | DNAse I-like superfamily protein. | 0 |
| RefSeq | XP_048498238.1 | uncharacterized protein LOC125496736 [Beta vulgaris subsp. vulgaris] | 0 |
| P92555 | Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1 | 0 | |
| TrEMBL | F4NCH8 | Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010071, GOSA_00015070 |
| Amaranthaceae | Suaeda glauca | 45 | Sgl00660, Sgl00734, Sgl02856, Sgl04536, Sgl05678, Sgl09582 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000022031 |