Basic Information
Locus ID:
gene:ENSEOMG00000020616
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 19 | 730958 | 735476 | - | gene:ENSEOMG00000020616 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 39,712.29 Da | 30.65 | 103.74 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 227 | 323 | 8.3913E-27 | - |
| CDD | cd00030 | C2 | 49 | 151 | 2.56079E-25 | - |
| Pfam | PF00168 | C2 domain | 225 | 317 | 3.5E-26 | IPR000008 |
| Pfam | PF00168 | C2 domain | 47 | 151 | 1.4E-23 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 223 | 344 | 1.18E-32 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 45 | 176 | 7.12E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 206 | 343 | 5.1E-34 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 43 | 186 | 3.8E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 226 | 324 | 8.7E-23 | IPR000008 |
| SMART | SM00239 | C2_3c | 48 | 148 | 2.9E-22 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 206 | 325 | 21.408024 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 28 | 149 | 20.882498 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 290 | 298 | 3.1E-8 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 268 | 281 | 3.1E-8 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 242 | 254 | 3.1E-8 | IPR000008 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.2 | - | 0 |
| RefSeq | XP_021769371.1 | synaptotagmin-5-like isoform X1 [Chenopodium quinoa] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RI35 | Synaptotagmin-5 (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_064340 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology