halophFGD

Basic Information

Locus ID: gene:ENSEOMG00000020306

Species & Taxonomic ID: Chenopodium album & 3559

Genome Assembly: GCA_948465745.1

Description: PHD finger protein ALFIN-LIKE

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
2	81933392	81935518	+	gene:ENSEOMG00000020306

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.10	45,794.63 Da	32.85	84.13	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07734	F-box associated	223	340	9.9E-7	IPR006527
Pfam	PF12165	Alfin	1	111	8.1E-44	IPR021998
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	157	344	3.7E-19	IPR017451

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

GO:0042393 (histone binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G26210.1	alfin-like 4. AL4 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
RefSeq	XP_021733536.1	F-box protein CPR30-like [Chenopodium quinoa]
Swiss-Prot	O81488	PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=AL4 PE=1 SV=2
TrEMBL	A0A803L8F1	F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13621, gene_19473
Amaranthaceae	Atriplex hortensis	1	Ah000520
Amaranthaceae	Suaeda glauca	2	Sgl55128, Sgl60381
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000006337, gene:ENSEOMG00000020306
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0023690, CQ.Regalona.r1.5BG0025170
Portulacaceae	Portulaca oleracea	1	evm.TU.LG01.2416