Basic Information
Locus ID:
gene:ENSEOMG00000019886
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 18 | 47656563 | 47659780 | - | gene:ENSEOMG00000019886 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.60 | 33,849.28 Da | 55.26 | 72.95 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 214 | 279 | 7.30654E-20 | - |
| CDD | cd16872 | ARID_HMGB9-like | 26 | 110 | 9.8031E-40 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 214 | 282 | 5.7E-14 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 27 | 110 | 2.7E-19 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 205 | 285 | 1.96E-20 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 20 | 124 | 3.27E-30 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 198 | 294 | 8.4E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 16 | 121 | 1.5E-26 | IPR036431 |
| SMART | SM01014 | ARID_2 | 20 | 110 | 1.8E-28 | - |
| SMART | SM00398 | hmgende2 | 213 | 283 | 5.2E-17 | IPR009071 |
| SMART | SM00501 | bright_3 | 24 | 115 | 5.4E-29 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 214 | 282 | 14.725587 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 23 | 114 | 26.529619 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 213 | - | - |
| Coils | Coil | Coil | 264 | 291 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021737119.1 | high mobility group B protein 9-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LIQ6 | High mobility group B protein 9 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology